PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v0484480.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family NAC
Protein Properties Length: 315aa    MW: 35740.2 Da    PI: 7.0751
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v0484480.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1072.3e-33622031128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee.vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk......s 80 
                      lp+G+rF+P+d+e++ ++L++kv ++       ++++  +++   +i++++P++Lp  v+++ +  +fF++ +k+y+tg+rk+r+++      +
  Lj4g3v0484480.1  62 LPAGVRFDPNDQEIL-QHLEAKVLSDVrklhplIDEFIpTLEGEnGICYTHPEKLP-GVSKDGQIRHFFHTPSKAYTTGTRKRRKVHtdeegsE 153
                      799***********9.99****998885664432222222333336**********.555666777******************7444465557 PP

              NAM  81 gyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                       +W++tgk+++v++ +g ++g kk+Lv+y   gr++k+ekt+Wvmh+y+l
  Lj4g3v0484480.1 154 TRWHKTGKTRPVFAGGGIVKGFKKILVLYtnYGRQKKPEKTNWVMHQYHL 203
                      78************99*************6658***************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.75E-3758222IPR003441NAC domain
PROSITE profilePS5100533.92862222IPR003441NAC domain
PfamPF023653.9E-1563203IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MSKEIMTWHS DSDPEERGIE LITPTIVVND TKPSQIRTIT CPSCGTNIEL QDQAGINDLP  60
GLPAGVRFDP NDQEILQHLE AKVLSDVRKL HPLIDEFIPT LEGENGICYT HPEKLPGVSK  120
DGQIRHFFHT PSKAYTTGTR KRRKVHTDEE GSETRWHKTG KTRPVFAGGG IVKGFKKILV  180
LYTNYGRQKK PEKTNWVMHQ YHLGSNEEEK DGELVVSKVF YQTQPRQCGT NSITKDPYEK  240
VILTSQNQSV HDDDNLALKN AALVDYYHHP FMNYDHVGHN MDSSSQLIPN FVVQGDSSSF  300
IRLAMDANKA RFERK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00165DAPTransfer from AT1G28470Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014507257.11e-179PREDICTED: NAC domain-containing protein 73-like
RefseqXP_014507258.11e-179PREDICTED: NAC domain-containing protein 73-like
SwissprotO494591e-115NAC73_ARATH; NAC domain-containing protein 73
SwissprotF4HY611e-115NAC10_ARATH; NAC domain-containing protein 10
TrEMBLA0A0S3QZA70.0A0A0S3QZA7_PHAAN; Uncharacterized protein
TrEMBLA0A0L9TLI20.0A0A0L9TLI2_PHAAN; Uncharacterized protein
STRINGGLYMA07G32250.11e-173(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF122834108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-117NAC domain containing protein 73